Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKMMVMGSVGCGKTTLCQKLHGYDIL--YKKTQAVE-----------YFQEMIDTPGEFVQHRQLYSALTVTAADASVIAILQSVTEKKQTFS-PMFA----S----IFAKPVIGIVTKVDLAESDKDIERAERELRMAGAKHIFYISSVEETGIEELRAYLED
2GF0 Chain:A ((9-166))
-YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSH----QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKC-AFMETSAKMNYNVKELFQELL-
General information:
TITO was launched using:
RESULT:
Template:
2GF0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48838 for 1017 contacts (-48.0/contact) +
2D Compatibility (PS) -14863 + (NN) -3072 + (LL) 620
1D Compatibility (HY) -2800 + (ID) 1300
Total energy: -70253.0 ( -69.08 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_2GF0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GF0-query.scw
PDB file :
Tito_Scwrl_2GF0.pdb
: