Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKAVQLTEFVGTAIGDTIGLVIANVDGQLLEAMKLEKSYRSIGILGARTGAG-PHIMAADEAVKATNTEVVKIELPRDTKGGAGHGSLIIFGGD-DVSDVKRAVEVALNELDKTFGDVYGNEAG-HIELQYTARASHALEKAFGAPVGKAFGLMVGAPAGIGVVMADTAVKSANVDVVAYSSPADGTSFSNE-----VILCISGDSGAVRQAVISAREIGKKLLGALGDEPKNDRPSYI
3IO0 Chain:A ((76-302))
-----PTMTEFVGTAGGDTVGLVIANVDSLLHKHLGLDNTCRSIGIISARVG-APAQMMAADEAVKGTNTEVATIELPRDTKGGAGHGIFIVL-KAADVSDARRAVEIALKQTDKYLGN-VYLCDAGHLEVQYTARASLIFEKAFGAPSGQAFGIMHAAPAGVGMIVADTALKTADVKLITYG----SPTNGVLSYTNEILITISGDSGAVLQSLTAARKAGLSILRSMGQDPVSMSKP--
General information:
TITO was launched using:
RESULT:
Template:
3IO0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102643 for 1904 contacts (-53.9/contact) +
2D Compatibility (PS) -23668 + (NN) -13640 + (LL) 852
1D Compatibility (HY) -18000 + (ID) 5900
Total energy: -162999.0 ( -85.61 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_3IO0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IO0-query.scw
PDB file :
Tito_Scwrl_3IO0.pdb
: