Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQTKKVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDL-NCEIPNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPK-HTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
1UDH Chain:A ((28-244))
---IDDAWRPLMEPELANPLTAHLLAEYNRRCQTEEVLPPREDVFSWTRYCTPDEVRVVIIGQDPYHHPGQAHGLAFSVRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARDGVLLLNTTLTVKRGAAASHSRIGWDRFVGGVIRRLAARRPGLVFMLWGTHAQNAIR--PDPRVHCVLKFSHPSPLSKV-PFGTCQHFLVANRYLETRSISPIDWSV---
General information:
TITO was launched using:
RESULT:
Template:
1UDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110337 for 1711 contacts (-64.5/contact) +
2D Compatibility (PS) -22997 + (NN) -10763 + (LL) 964
1D Compatibility (HY) -18000 + (ID) 4200
Total energy: -165333.0 ( -96.63 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_1UDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UDH-query.scw
PDB file :
Tito_Scwrl_1UDH.pdb
: