Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDVNNVELIISAVRPEQYPETDLPEYALAGRSNVGKSSFINTMIRRKSMARISQKPGKTQTLNFYK----IEEALFFVDVPGYGFAKVSKTEREKWGVMIETYITSREQLRGVIQIVDLRHKPTEDDRMMYEF-LKYYDIPVIVIATKADKIPRSK-WQKNAKIVRETLDFDPDDKFVLFSSETKMGKDEAWQFIKEGME
3IEV Chain:A ((8-180))
--------------------MKVGYVAIVGKPNVGKSTLLNNLLGTK-VSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL---EEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP--ELTEIVPISALKGANLDELVKTILKYL-
General information:
TITO was launched using:
RESULT:
Template:
3IEV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76075 for 1296 contacts (-58.7/contact) +
2D Compatibility (PS) -17925 + (NN) -4739 + (LL) 1848
1D Compatibility (HY) -8000 + (ID) 2000
Total energy: -106891.0 ( -82.48 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_3IEV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IEV-query.scw
PDB file :
Tito_Scwrl_3IEV.pdb
: