Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITLKSRREIDEMKAAGKILADTHKELKKIIKPGITSWDLEVFTEEFL-RKNGATPEQKGFEGYEYAICASINDEICHGFPRKQKL-NQGDIITVDMVVNYHGALADSAWTYAVGEVPDDVKHLMDVTHKALYLGIEQAQVGARVGDIGHAIQTYVESENLAVVREFIGHGVGPTLHEKPDIPHYGTAGKGPRLKEGMVITVEPMVNMGAWKAKMDDNGWTARTVDGSLSAQYEHTFAITKDGPEILTYQGEND
2EVM Chain:A ((4-254))
--SIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDD-
General information:
TITO was launched using:
RESULT:
Template:
2EVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101936 for 2190 contacts (-46.5/contact) +
2D Compatibility (PS) -26764 + (NN) -10183 + (LL) 336
1D Compatibility (HY) -18800 + (ID) 4550
Total energy: -161897.0 ( -73.93 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_2EVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EVM-query.scw
PDB file :
Tito_Scwrl_2EVM.pdb
: