Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MKKLIIAALGLTLVLSGCAPKLDSNDKVVQKDDSK--AETGIMTKNQISSNYYKTVLPYKASKSRGLVVSN------IYSRYDINELESGLMRVSQNKYSPDNYLFQEGQYLDKETLEKWLDRKSDKNPNGLNPASNGNGENRKPIYLA-------HILEQDYLKQTDKDTVALGGISIALA-------MNSVDYYQK--EKYGDTYEQPISDSELLAQG-KEMSATVLNRIRQTKGLENVPVTIAIYKQGARDAVAPGNYI----AYATANGDSLSNWKDIDEKNYVLPSTESAKDHKTDNDNFLNFKKAIEDYYPNFTGVVGRGRYEDGQLAELNIDIPLQFYGEAEIIGFTQYVTDLVGQHIPKTADLQVNISTSDGPAALIT--RKANEDAATAHIYD---------- |
| 4PG7 Chain:A ((20-446)) | HMKKLNIALLGLGTVGSGVVKIIEENRQQIQDTLNKDIVIKHILVRDK-SKKRPLNISQYHLTEDVNEILNDDSLDIIVEVMGGIEPTVDWLRTALKNK----KHVITANKDLLAVHLKLLEDLAEENGVALKFEASVAGGPNNISKFMGILNGTSNFILSKMTKEQTTFEEALDEAKRLGFAEADPTDDVEGVDAARKVVITSYLSFNQVIKLNDVKRRGISGVTLTDINVADQL-GYKIKLIGKGIYENGKVNASVEPTLIDKKHQLAAVEDEYNAIYVIGDAVGDTMFYGKGAGSLATGSAVVSDLLNVALFFESTLPP-----HFELKTDKTREMEKSNFFVVVNHVKGSIENFENELKAILPFHRSLRVANYDNQSYAAVIVGLESSPEELITKHGYEVDKVYPVEGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PG7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 10362 for 2632 contacts (3.9/contact) +
2D Compatibility (PS) -37756 + (NN) -5697 + (LL) 256
1D Compatibility (HY) -5200 + (ID) 3300
Total energy: -41335.0 ( -15.70 by residue)
QMean score : 0.278
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