Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIWNSIVGKIWSTIILLLIGILVISGFLVAMIYEKNNITRITNELEDKTASIITVMQENNEVISAENNNDSALILLDDTMGVIIEQNGKSVYQSQSPDTISSASANKLIQDKTLDKALEKDNSVTMKYNFKTEKSSLPVEISAQKFKLANGETGVVYVYQSYHDILKVNEKTMSTLIISGIIAIVITSILSFVFSSRMAFPLREMKKIAIAVSKGNFDNRVPTYTHDEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLHNWFFSPENTEKVLIPVALNELLNDTLEKKESQVGEITFADHTYVAILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQ----SDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQK-------LPLAPLLRKVISNFDVLAKENFV---ELGL-----ELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGY----DGKVILKQTIDVARSNLVITVSDNGSGIAEEDIPYLFERFYKVDK------ARKRGKAVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIITLPLYK |
| 2Q8G Chain:A ((104-366)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFDPVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFG----------KHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVT--LGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAV-PLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKAL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Q8G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -115953 for 1579 contacts (-73.4/contact) +
2D Compatibility (PS) -22958 + (NN) -1398 + (LL) 29356
1D Compatibility (HY) -13600 + (ID) 2300
Total energy: -126853.0 ( -80.34 by residue)
QMean score : 0.535
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