Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYLKETLDQFASIDNILKLLKKNPSFNKHCIQERLPQKT-IITSNKQRKHIYIIEEGFMKLIFDDNKPRD--FSYILSKGAFPFLPVYIEDIPEHTMMVAL-TDIV-WWKIDIGFFKSMMEIEDPRNYLMLHQLAETRRRFYTIAYQ-EKLTSRESIY-YSLSTLIE-FGLRISEKVVELPEFLTYQILADHANTSKSYTSKVLGHLREDGILESQKKPWRINDVQKLQKLIEMNVPLVKIQKKLRADLHS
4RFA Chain:A ((10-225))
----------EKLDTVLGYLKEFPDYYKYVTKKTYTLNEKIIFEDEKAKSIFFIVEGYAAVELEDNLRKTNYISIFVLPYNVLG---IDAFSSYPKHSITVMSESLMLYKIDADFLLNILSIKPDVNDFLLTSIADVFARHYALL-GMIAKTPKERIYMALENLAVEMGTEDEERNEIVLPNFINQSVLARYCRTTQPNISNLLTELVEEEFLINKKSPYRID------------------KDSLD-----
General information:
TITO was launched using:
RESULT:
Template:
4RFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118308 for 1405 contacts (-84.2/contact) +
2D Compatibility (PS) -22173 + (NN) -9622 + (LL) 3588
1D Compatibility (HY) -14000 + (ID) 2350
Total energy: -162865.0 ( -115.92 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_4RFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RFA-query.scw
PDB file :
Tito_Scwrl_4RFA.pdb
: