Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVLVIGANGKIGRLLVEKLAMEKG-FFVRAMVRKAEQVSELEKLGAKPIIADLKK--DFHYAYDEIEAVIFTAGSGGHTPASETVNIDQNGAIKAIETAKEKGVRRFIIVSSYGADNPENGPESLAHYLKAKQAADEELKKSGLDYTIVRPVGLSDDPATGKIAEV---SGKPKTNIPRADVADFISEALSEK-SSFYKTYTIESGD-TPIKQFFN
3QVO Chain:A ((24-234))
KNVLILGAGGQIARHVINQLADK-QTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED----------LDIQANSVIAAMKACDVKRLIFVLSLG----------IGEPLKPFRRAADAIEASGLEYTILRPAWLTDEDII-DYELTSRNEPFKGTIVSRKSVAALITDIIDKPEKHIGENIGINQPGTDGDKPFFM
General information:
TITO was launched using:
RESULT:
Template:
3QVO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80676 for 1500 contacts (-53.8/contact) +
2D Compatibility (PS) -21105 + (NN) -10574 + (LL) 72
1D Compatibility (HY) -10800 + (ID) 2300
Total energy: -125383.0 ( -83.59 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_3QVO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QVO-query.scw
PDB file :
Tito_Scwrl_3QVO.pdb
: