Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHN-----INGEQEIKDVFVDVEKILASF
4K46 Chain:A ((1-214))
MRIILLGAPGAGKGTQAQFIMAKFGIPQISTGDMLRAAIKAGTELGKQAKSVIDAGQLVSDDIILGLVKERIAQDDCAKGFLLDGFPRTIPQADGLKEV----GVVVDYVIEFDVADSVIVERMAGRRAHLASGRTYHNVYNPPKVEGKDDVTGEDLVIREDDKEETVLARLGVYHNQTAPLIAYYGKEAEAGNTQYLKFDGTKAVAEVSAELEKALA--
General information:
TITO was launched using:
RESULT:
Template:
4K46.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33589 for 1622 contacts (-20.7/contact) +
2D Compatibility (PS) -23001 + (NN) -15818 + (LL) 352
1D Compatibility (HY) -18400 + (ID) 5150
Total energy: -95606.0 ( -58.94 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_4K46.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K46-query.scw
PDB file :
Tito_Scwrl_4K46.pdb
: