Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAIFITLEGPDGSGKTTVGTLLNQKMTEAGIDFIKTREPGGSPISEKVRNIVLGIGNEEMDPKTEVLLIAGARRQHVVETIRPALAAGKSVLCDRFMDSSLAYQGAGRDMNMEQVLQVNLYAIEDTLPDRTYYLDVPAEVGLARIAANKGREVNRLDKEDITYHEKVQAGYEKVINMFPERFMRVDATKTPEEITETILADILRQLA
4EDH Chain:B ((4-189))
MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARA-----R-LDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDA--------------------
General information:
TITO was launched using:
RESULT:
Template:
4EDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29284 for 1437 contacts (-20.4/contact) +
2D Compatibility (PS) -19594 + (NN) -8028 + (LL) 2220
1D Compatibility (HY) -11600 + (ID) 3900
Total energy: -70186.0 ( -48.84 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_4EDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EDH-query.scw
PDB file :
Tito_Scwrl_4EDH.pdb
: