Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQTFIVKKEHISQYPNPLFVNKNESIWVFEEDTEYPGWIFCKVKSSGKEGWIPKQIIQISNDG-----KSGTVSED------------YS-ARELNVKPGDKLESNRELNGWVWCVTEENEAGWVPRENLEV
1XOV Chain:A ((216-326))
----------------PIKMYKAGSSLLVYEHN---KYWYKAYIN--DKLCYIYKSFCISNGKKDAKGRIKVRIKSAKDLRIPVWNNTKLNSGKIKWYSPGTKLSWYDNKKGYLELWYEKDGWYYTANYFLK-
General information:
TITO was launched using:
RESULT:
Template:
1XOV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17827 for 477 contacts (-37.4/contact) +
2D Compatibility (PS) -10293 + (NN) -4769 + (LL) 1736
1D Compatibility (HY) -6000 + (ID) 700
Total energy: -37853.0 ( -79.36 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_1XOV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XOV-query.scw
PDB file :
Tito_Scwrl_1XOV.pdb
: