Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------MTLYIIANPHAGNKNASTIVGK-IQELYHTEDISVFYTEQKDDEKKQVINILRSFKESDHLMIIGGDGTLSKVMTYLPQH--------IPCAYYPVGSGNDFARALKI----------PNLKETLTAIQTERLKEINCFIYD-----KGLILNSLDLGFAAYVVWKASNSKIKNILNRYRLGKITYIVIAIKSLLHSSKVQVLVEGETG--------------------QQIKLNDLYFFALANNTYFGGGITIWPKASALTAELDMVYAKGHTFLKRLSILLSLVFK---RHTTSKSIKHQTFKAMTVY-FPKNSLIEIDGEIVELDQISLKCQKRYLYM--- |
| 3VZD Chain:A ((3-361)) | MGSGVLPRPCRVLVLLNPRGGKGKALQLFRSHVQPLLAEAEISFTLMLTERRNHARELVRSEELGRWDALVVMSGDGLMHEVVNGLMERPDWETAIQKPLCSLPAGSGNALAASLNHYAGYEQVTNEDLLTNCTLLLCRRLLSPMNLLSLHTASGLRLFSVLSLAWGFIADVDLESEKYRRLG-EMRFTLGTFLRLA---ALRTYRGRLAYLPVGRVGSQGPVDAHLVPLEEPVPSHWTVVPDEDFVLVLALLHSHLGSEMFAAPMGRCAAGVMHLFYVRAGVSRAMLLRLFLAMEKGRHMEYECPYLVYVPVVAFRLEPKDGKGVFAVDGELMVSEAVQGQVHPNYFWMVSG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VZD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178898 for 2438 contacts (-73.4/contact) +
2D Compatibility (PS) -31168 + (NN) -4602 + (LL) 756
1D Compatibility (HY) -16800 + (ID) 2550
Total energy: -233262.0 ( -95.68 by residue)
QMean score : 0.434
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