Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKKKSVFTCQECGYQSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLNGEKSRPTKLKDVSSINYSRTKTDMDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAN-KGTVLYVSGEESAEQIKLRSERLGDI-----DNEFYLYAE---------TNMQSIRSEI----EK--IKPDFLIIDSIQTIMSPEVSSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHH--TFRILRAVKNRFGSTN-EIGIFEMQS-GGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQESFIGEIGLTGEIRRVTRIEQRINEASKLGFTKIYAPKNSLAGIEIPKGIDVIGVTTVSQVLKAVFST |
| 2W0M Chain:A ((3-230)) | -------------------------------------------------------------------SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKP-------AMARKISYYLKRVLNKWNFTIYATSQ-----------GVEHVADGIIRFRRMIRNGELHRYILIEKMRQTDHDKHVWEIDIVNGKGIVLKGRLEE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2W0M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -106429 for 1527 contacts (-69.7/contact) +
2D Compatibility (PS) -20687 + (NN) -10131 + (LL) 17140
1D Compatibility (HY) -10000 + (ID) 1800
Total energy: -131907.0 ( -86.38 by residue)
QMean score : 0.603
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