Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTYFDNFLKTNQAYADLHGTAHLPIKPKTKVAIVTCMDSRLHVAQALGLDLGDAHILRNAGGRVTDDVLRSLVISQQQLGTREIVVLHHTDCGAQTFTNE-----------------------AFATQLQRDLGVDMHGHDFLPFNDIEESVREDVAKLHASPLIPNDVVISGAIYDVDTGRMVEVK
3TEN Chain:F ((3-182))
-SEYIDSELKRLEDYA-LRRVKGIP--NNRRLWVLTCMDERVHIEQSLGIQPDDAHIYRNAGGIVTDDAIRSASLTTNFFGTKEIIVVTHTDCGMLRFTGEEVAKYFISKGIKPTEVQLDPLLPAFRISSEEDFIKWFKFYEDLGVKSPDEMALKGVEILRNHPLIPKDVRITGYVYEVETHRLRKPN
General information:
TITO was launched using:
RESULT:
Template:
3TEN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98308 for 1135 contacts (-86.6/contact) +
2D Compatibility (PS) -16934 + (NN) -10045 + (LL) 400
1D Compatibility (HY) -12400 + (ID) 3200
Total energy: -140487.0 ( -123.78 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_3TEN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TEN-query.scw
PDB file :
Tito_Scwrl_3TEN.pdb
: