Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYKKYQIIYAPDVLEKLKEIRDYISQNYSSTSGQRKMEQIINDIEKLEVFPEVGFDADEKYGSEISNYHSTRGYTLSK-DYIVLYHIEEEENRVVIDYLLPTRSDYMKLFK-----
2KC8 Chain:A ((1-95))
---MAYFLDFDERALKEWRKL------------GSTVREQLKKKLVEVLESPR-------IEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKAEASEVYSEAVKRIL
General information:
TITO was launched using:
RESULT:
Template:
2KC8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42334 for 578 contacts (-73.2/contact) +
2D Compatibility (PS) -9706 + (NN) -2495 + (LL) 864
1D Compatibility (HY) -4000 + (ID) 550
Total energy: -58221.0 ( -100.73 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_2KC8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KC8-query.scw
PDB file :
Tito_Scwrl_2KC8.pdb
: