Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVRKAVIPAAGLGTRFLPATKALAKEMLPIVDKPTIQFIVEEALKSGIEDILVVTGKSK-RSIEDHFDSNFELEYNLKEKGKNELLKLVDETTGIRLHFIRQSHPRGLGDAVLQAKAFVGNEPFVVMLGDDLMDITNNKVIPLTKQLINDFEAT-HASTIAVMEVPHEDVSAYGVIAPQGEGVNGLYSVNTFVEKPSPEEAPSNLAIIGRYLLTPEIFNILETQKPGAGNEIQLTDAIDTLNKTQRVFARKF--TGDRYDVGDKFGFMKTSIDYALQHPQVKDDLKKYIIDLGKSLEKTSKK |
| 1LVW Chain:A ((1-244)) | GAHMKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGS--------------------QFGVRFSYRVQEEPRGIADAFIVGKDFIGDSKVALVLGDNVFYG------HRFSEILRRAASLEDGAVIFGYY--VRDPRPFGVVEFDS-----EGRVISIEEKPS--RPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIETIQKRQGFYIACLEEIAYNNGWITRED |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LVW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138121 for 1969 contacts (-70.1/contact) +
2D Compatibility (PS) -25753 + (NN) -10431 + (LL) 1772
1D Compatibility (HY) -14800 + (ID) 2900
Total energy: -190233.0 ( -96.61 by residue)
QMean score : 0.492
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