Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKALFTGSFDPVTNGHLDIIERASYLFDHVYIGLFYNLEKQGYFSIECRKKMLEEAIRQFKNVSVLVAQDRLAVDLAREVGAKYFVRGLRNSQDFDYEANLEFFNKQLADDIETVYLSTSPSLSPISSSRIRELIYFKASVKPFVPKSVVREVEKMSEE
1GN8 Chain:B ((1-150))
MQKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKPMFTLEERVALAQQATAHLGNVEVVGFSDLMA-NFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLA-
General information:
TITO was launched using:
RESULT:
Template:
1GN8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95661 for 1156 contacts (-82.8/contact) +
2D Compatibility (PS) -16289 + (NN) -7364 + (LL) 384
1D Compatibility (HY) -12800 + (ID) 2850
Total energy: -134580.0 ( -116.42 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_1GN8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GN8-query.scw
PDB file :
Tito_Scwrl_1GN8.pdb
: