Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTATKQHKKVILVGDGAVGSSYAFALVNQGIAQELGIIEIPALFDKAVGDAEDLSHALAFTSPKKIYAATYADCADADLVVITAGAPQKPGETRLDLVGKNLAINKSIVTQVVESGFNGIFLVAANPVDVLTYSTWKFSGFPKERVIGSGTSLDSARFRQALADKIGVDARSVHAYIMGEHGDSEFAVWSHANVAGVQLEQWLQENRDIDEQGLVDLFISVRDAAYSIINKKGATYYGIAVALARITKAILDDENAVLPLSVYQEGQYGDVKDVFIGQPAIVGAHGIVRPVNIPLNDAELQKMQASAEQLKDIIDEAWKNPEFQEASKN |
| 3VKU Chain:D ((7-316)) | ----KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI--FKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAG--------------KNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYG-LNDIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDA------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VKU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -217248 for 2593 contacts (-83.8/contact) +
2D Compatibility (PS) -32151 + (NN) -12910 + (LL) 1372
1D Compatibility (HY) -36400 + (ID) 9900
Total energy: -307237.0 ( -118.49 by residue)
QMean score : 0.633
|
|
|