Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRH-EHWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYL-----EKLNLGEVHYLKPVE
1KBR Chain:A ((1-156))
-TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPATLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW---------
General information:
TITO was launched using:
RESULT:
Template:
1KBR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123248 for 1134 contacts (-108.7/contact) +
2D Compatibility (PS) -15943 + (NN) -5566 + (LL) 744
1D Compatibility (HY) -14400 + (ID) 3300
Total energy: -161713.0 ( -142.60 by residue)
QMean score : 0.642
(partial model without unconserved sides chains):
PDB file :
Tito_1KBR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KBR-query.scw
PDB file :
Tito_Scwrl_1KBR.pdb
: