Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTEFKNIIVTGGAGFIGSNFVHYVYNNHPYVHVTVLDKLTYAGNRANIEAIL-GDRVELVVGDIADAELVDKLAA--KADAIVHYAAESHNDNSLEDPSPFIHTNFIGTYTLLEAARKY----------DIRFHHVSTDEVYGDLPLREDLPGNGEGPGEKFTAETKYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRIGETYLIGADGEKNNKEVLELILEKMGQPKDA-------YDHVTDRAGHDLRYAIDSTKLREELGWEPQFTNFSEGLEETIKWYTENETWWKAEKDAVEAKYAKTQEVIK |
1KEW Chain:A ((1-345)) | ----MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEV--ENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPL-ETFESGIRKTVEWYLANTQWVNNVKSGAYQSWIEQNYEGR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KEW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -93671 for 2844 contacts (-32.9/contact) +
2D Compatibility (PS) -35254 + (NN) -17811 + (LL) 408
1D Compatibility (HY) -26400 + (ID) 7350
Total energy: -180078.0 ( -63.32 by residue)
QMean score : 0.667
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