Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----M-QVRLAFPNEIDQI-MLLIEEARAEIAKTGSDQWQKEDGYPNRNDIIDDILNGYAWVGIEDG-MLATYAAVIDGHEEVYDAIYEGKWLHDNHRYLTFHRIAISNQFRGRGLAQTFLQGLIEGHKGPDFRCDTHEKNVTM-QHILNKLGYQYCGKVPLDGVRLAYQKIKEKGETSIYREIDERNPM
2PC1 Chain:A ((14-186))
NLYFQGMQIRLAFPNEIDQIML-LIEEARAEIAKTGSDQWQKEDGYPNRNDIIDDILNGYAWVGIEDGMLA-TYAAVIDGHEEVYDAIYEGKWLHDNHRYLTFHRIAISNQFRGRGLAQTFLQGLIEGHKGPDFRCDTHEKN-VTMQHILNKLGYQYCGKVPLDGVRLAYQKIKEK---------------
General information:
TITO was launched using:
RESULT:
Template:
2PC1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85376 for 1210 contacts (-70.6/contact) +
2D Compatibility (PS) -18236 + (NN) -9793 + (LL) 1288
1D Compatibility (HY) -20400 + (ID) 7850
Total energy: -140367.0 ( -116.01 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_2PC1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PC1-query.scw
PDB file :
Tito_Scwrl_2PC1.pdb
: