Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKGLMISFEGPDGAGKTTVLEAVLPLLREKLSQDILTTREPGGVTISEEIRHIILDVKHTQMDKKTELLLYMAARRQHLVEKVLPALEEGKIVLMDRFIDSSVAYQGSGRGLDKSHIKWLNDYATDSHKPDLTLYFDVPSEVGLERIQKSVQREVNRLDLEQLDMHQRVRQGYLELADSEPNRIVTIDASQQLDEVIA---ETFSIILDRINQ
4EDH Chain:B ((6-212))
---GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLAR--A----RLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERLNG
General information:
TITO was launched using:
RESULT:
Template:
4EDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65218 for 1589 contacts (-41.0/contact) +
2D Compatibility (PS) -21870 + (NN) -12168 + (LL) 1220
1D Compatibility (HY) -14400 + (ID) 4300
Total energy: -116736.0 ( -73.47 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_4EDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EDH-query.scw
PDB file :
Tito_Scwrl_4EDH.pdb
: