Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDVLRRLYKFAPEKKVYSYASLVLSAIATIFSVVPYFYLWKFLNELLVLKNLESANKYALWIFMFLVLQTLVYFLSLYCSHMFAFRVERNLKIEGLNNLLEASFSFFDTNPSGKTRQIIDDNASETHSILAHMQPDMVNAMVYPVILLVVSFLVSISFGIVMVVSLVLGVFLITKMFGNQNFLQKYMASNEDMSSEIVEYIRGVKVIKIFNIGIEKFRSLHKTIITSSELGYAYAISCRKWKVFYDSFFMGLCMVTIPYGVYLLNINTHLGEIISYTVFFTAFIELLYNAFNKVMFLGQNKAKAKNSIDKLEEIFNKMQVKKLDSGLSDEIQNFDIEFEKVSFKYEGNTPYVLKDLSFKLDSGKSYALIGSSGSGKSTIAKLISGFYDVDSGVIKIGGRDIKEYSRETIASSIAFVFQNAKLFKMSIYDNVRIGNPDATYEEIMQALEKARCNEILDKFELRE--NTMIGAEGVYLSGGETQRIVIARAILKNSPIIILDEASAAADPENEYELQMAFTQLIKNKTVIMIAHRLSAIKNMDEIIVVENGQIIERGSSKLLLEDKSSKYSYFMNMYIRANDWIMSNEV |
1XEF Chain:C ((1-238)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFIS--ELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1XEF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -170427 for 1852 contacts (-92.0/contact) +
2D Compatibility (PS) -25385 + (NN) -4056 + (LL) 30672
1D Compatibility (HY) -24000 + (ID) 4650
Total energy: -197846.0 ( -106.83 by residue)
QMean score : 0.627
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