Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNYSGEVGLQYHLQIRPGDV--GRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIDLDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFY-GQHEPERMP--VSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEAAIQVAVEALRTLIENDKSQ
4JP5 Chain:E ((7-253))
-----------FHLGLTKNDLQGATLAIVPGDPQRVEKIAKLMDNPVHLASHREFTSWRAELDGKAVIVCSTGIGGPSTSIAVEELAQLGVRTFLRIGTTGAIQPHINVGDVLVTTAAVRLDGASLHFAPMEFPAVADFSCTTALVNAAKSVGATTHIGITASSDTFYPGQERYDTFSGRVVRHFKGSMEEWQSMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQQEI--------TESHAVKIVVEAARHLL------
General information:
TITO was launched using:
RESULT:
Template:
4JP5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112077 for 2071 contacts (-54.1/contact) +
2D Compatibility (PS) -25632 + (NN) -18202 + (LL) 800
1D Compatibility (HY) -18000 + (ID) 4900
Total energy: -178011.0 ( -85.95 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_4JP5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JP5-query.scw
PDB file :
Tito_Scwrl_4JP5.pdb
: