Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVKQGDTLSAIASQYRTTTNDITETNEIPNPDSLVVGQTIVIPIAGQFYDVKRGDTLTSIARQFNTTAAELARVNRIQLNTVLQIGFRLYIPPAPKRDIESNAYLEPRGNQVSENLQQAAREASPYLTYLGAFSFQAQRNGTLV-APPLTNLRSITESQNTTLMMIITNLENQAFSDELGRILLNDETVKRRLLNEIVENARRYGFRDIHFDFEYLRPQDREAYNQFLREARDLFHREGLEISTALAPKTSATQQGRWYEAHDYRAHGEIVDFVVLMTYEWGYSGGPPQAVSPIGPVRDVIEYALTEMPANKIVMGQNLYGYDWTLPYTAGGTPARAVSPQQAIVIADQNNASIQYDQTAQAPFFRYTDAENRRHEVWFEDARSIQAKFNLIKELNLRGISYWKLGLSFPQNWLLLSDQFNVVKKTFR |
4S3J Chain:A ((8-430)) | -VRSGDSVYSLASKYGSTPDEIVKDNGLNPAETLVVGQALIVNTKGNNYYVQPGDSLYRISQTYNVPLASLAKVNNLSLKSILHVGQQLYVPKGTKRSVESIAYLQPSTIPIKESLVNATRAINPFLTYLAYFSFEAKRDGTLKEPTETAKIANIATQGQTIPMLVITNIENGNFSADLTSVILRDATIQNKFITNILQTAEKYGMRDIHFDFESVAPEDREAYNRFLRNVKIRLPS-GYTLSTTLVPKTSSNQK--FFEAHDYKAQGQIVDFVVIMTYDWGWQGGPPMAISPIGPVKEVLQYAKSQMPPQKIMMGQNLYGFDWKLPFKQGNPPAKAVSSVAAVALARKYNVPIRYDFTAQAPHFNYFDENGVQHEVWFEDARSIQSKFNLMKEQGIGGISYWKIGLPFPQNWRLLVENFTITKK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4S3J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190114 for 3470 contacts (-54.8/contact) +
2D Compatibility (PS) -44724 + (NN) -7802 + (LL) 524
1D Compatibility (HY) -44000 + (ID) 10300
Total energy: -296416.0 ( -85.42 by residue)
QMean score : 0.498
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