Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFFRMLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHALYKRKFYFLA-RLISQVSRFFTGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVFQGVTLGGTGKEKGKRHPTIKDDALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFSTVVGIPGRVVVQNGKKVRRDLNHQDLPDPVADRFKSLEQQILELKAELEDRKERINQK
3GVD Chain:K ((87-247))
--------DILAVRLRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWAQDRKALAIYLQNQVSVAF-GVDIHPAATIGCGIMLDHATGIVIGETAVVENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQSVPAHTTAAGVPARIV------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129698 for 1300 contacts (-99.8/contact) +
2D Compatibility (PS) -17110 + (NN) -6530 + (LL) 4584
1D Compatibility (HY) -12400 + (ID) 4050
Total energy: -165204.0 ( -127.08 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_3GVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GVD-query.scw
PDB file :
Tito_Scwrl_3GVD.pdb
: