Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEHYYSEKPSVKSNKQTWSFRLRNKDFTFTSDSGVFSKKEVDFGSRLLIDSFEEPEVEGGILDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENAEQNGITNVKIYQSDLFSNVDSAQTFASILTNPPIRAG----KKVVHAIFEKSAEHLKASGELWIVIQKKQGAPSAIEKLEELFDEVSVVQKKKGYYIIKAKKV
2PJD Chain:A ((167-335))
---------------------------LTVKTLPGVFSRDGLDVGSQLLLSTLTP-HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSE--VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPY---PDVLDETFGFHEVIAQTGRFKVYRAI--
General information:
TITO was launched using:
RESULT:
Template:
2PJD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16253 for 1337 contacts (-12.2/contact) +
2D Compatibility (PS) -17530 + (NN) -5288 + (LL) 1412
1D Compatibility (HY) -6000 + (ID) 1800
Total energy: -45459.0 ( -34.00 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_2PJD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PJD-query.scw
PDB file :
Tito_Scwrl_2PJD.pdb
: