Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQNAVIYQPVQIEYLKKTSDLFSEQQLADSFVLIFHLKGNGYISIGTNTNPLQKKTLYVCPPNETFGFTPAADGHIDACIIRLLSYIKETGQDIFTPCTESELAKLKLMNVSHIENLAVRLQELAALWNESSQLSQLKCVIEVQSLIYDLFTASLSDQTDTHSAIEKTKHYIETHADTKITLAQLSQMAGISAKHYSESFKKWTGQSVTEFITKTRITKAKRLMAKSNCKLKEIAHQTGYQDEFYFSRIFKKYTGCSPTSYMKKRRKKIAAYGRGTMGHLIPLHHI--PFAAALHPKWTSYYYQHYSTDIPVQLSAYRFNEKWEENLYTLSQAEPDVIVSMDSISPEEQDRLNRIAEVMYLPSE-----ESWRTHFLQTASFLKEE--SEAEKWLADYDQQTTAAKKTLQHVQGLRFLFLRLHKQNFYLAHNRSVREVFFGDLGFSSATTAD--TPSEQAISLENIANYQADCMMLFLFKEP--ETIAYYQQLQQTEAWQNLSAVRDNRVYLLSLDPWNE--YSACGHERIVQQTVSLLSGDCP |
4JCC Chain:A ((4-285)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PTEVTIKSSL-D-EVKLSK-VPEKIVTFDLGAADTIRALGFAKNIVGMPTKT-VPT-YLKDLVGTVK------NVGSMKEPDLEAIAALEPDLIIASPRT-QKFVDKFKEIAPTVLFQASKDDYWTSTKANIESLASAFGETGTQKAKEELAKLDESIQEVATKNESS-DKKALAILLNEGKMAAFGAKSRFSFLYQTLKFKPTDTKFEDSRHGQEVSFESVKEINPDILFVINRTLAIGGDNSSNDGVLENALIAETPAAKNGKIIQLTPDLWYLSGGGLESTKLMIEDIQKAL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JCC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155925 for 2206 contacts (-70.7/contact) +
2D Compatibility (PS) -27745 + (NN) -5654 + (LL) 19336
1D Compatibility (HY) -5600 + (ID) 1950
Total energy: -177538.0 ( -80.48 by residue)
QMean score : 0.340
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