Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEMMIKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRDL
3N0R Chain:A ((20-160))
----------------EMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDANLSPRVALYRVFHAIWLSSGA----GHDQ---------------G-------------LHAGDDAAQRLMRIAPRSRQAFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELA--
General information:
TITO was launched using:
RESULT:
Template:
3N0R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73292 for 1016 contacts (-72.1/contact) +
2D Compatibility (PS) -14231 + (NN) -1580 + (LL) 3556
1D Compatibility (HY) -800 + (ID) 950
Total energy: -87297.0 ( -85.92 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_3N0R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N0R-query.scw
PDB file :
Tito_Scwrl_3N0R.pdb
: