Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METNKPTLYWSLLMFKDWNFYIASTLKGLVFVGSQNKPIEEL--FEWARKRFPGSLLVED-DDKLEPYAVEITQYLEGKRK--NFTVPVEY-AGTQFQLAVWNALC-EIPYGQTKSYSDIANDINKPAAVRAVGAAIGANPVLITVPCHRVIGKNGSLTGYRGGFEMKTLLLDLEKRASSEMDVPH
1MGT Chain:A ((18-169))
---------------------VIF-SGRVQGIAFAFDRGTLMKRIHDLAEHLGKRGVSISLDVQPSDYPEKVFKVLIGELDNASFLRELSFEGVTPFEKKVYEWLTKNVKRGSVITYGDLAKALNT--SPRAVGGAMKRNPYPIVVPCHRVVAHDG-IGYYSSGIEEKKFLLEIEGV---------
General information:
TITO was launched using:
RESULT:
Template:
1MGT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69317 for 1038 contacts (-66.8/contact) +
2D Compatibility (PS) -15329 + (NN) -4621 + (LL) 2084
1D Compatibility (HY) -8400 + (ID) 1800
Total energy: -97383.0 ( -93.82 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_1MGT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MGT-query.scw
PDB file :
Tito_Scwrl_1MGT.pdb
: