Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVNQNKKVLFLTDIENGLEPILQEATNTSAENMLTIQSYGASISHPYGEIMRSVIFAIYQEDVEEIFVVGTKDKKTSAGNGLTQ------LETMKDKIQTLD--YLFQNCKPEFLGGTVDEW--------------LNENSSDTIEKSVDMIRHHPLVPSY----VKVRGLFVNHKGGKPSIAEVPDVKTGQAMPDHCLS
3VQJ Chain:A ((33-213))
--IQPSRRVAVVACMDARLDVE--DLLGLQTGEAHIIRNAGGVIN---EDAIRCLIISHHLLNTHEIILVHHTRCGMLAFTDDLLRAGLEGDAAAEKLIGQATGRAFVSAGKASASPAAFQAFRGPPEPLDAPRSDASTERIAADVRRGLSIILNHPWLPTAGPDAITVRGFIYDVDTGRLEEVSYPG-------------
General information:
TITO was launched using:
RESULT:
Template:
3VQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41426 for 1109 contacts (-37.4/contact) +
2D Compatibility (PS) -16823 + (NN) -8212 + (LL) 1060
1D Compatibility (HY) -5200 + (ID) 1150
Total energy: -71751.0 ( -64.70 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_3VQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VQJ-query.scw
PDB file :
Tito_Scwrl_3VQJ.pdb
: