Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | --------MVKK-WLIQFAVMLSVLSTFTYSASAVGVTAITGNNSFDTAMPIGYWKYKNIDTTI------LEAGQDEAYFT--FTANKGEKVYMRSTYQSAYTGMK--------IEIYDKN-------RIPVSQGTEVINPNTFS-SFIYANADAQNTTDTFYVKVSRGTYTGNMYFTLSIEDRIKSGSGTFQFSGVAENKGNTSLSPSGSDSSVIKVDLTNQSGIPRDAIVTRVQTTATQTPSQGNTRHL--IMTSENNEWSRALVNS--STSGSYDISLSD-QLSVAKV--WSFKYNTLATARSTMSNVKAKIDYEYDVTKQF--- |
4Q4D Chain:A ((7-323)) | QIVVGICSMAKKSKSKPMKEILERISLFKY------ITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGG--GSQRLFRKIGSRSSVYSPE---SNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDCAKILGNIVMRELAPQFHIPWS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q4D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -15815 for 1970 contacts (-8.0/contact) +
2D Compatibility (PS) -28929 + (NN) -7918 + (LL) 780
1D Compatibility (HY) -9200 + (ID) 2300
Total energy: -63382.0 ( -32.17 by residue)
QMean score : 0.110
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