Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLEVKLPGLDLKNPIIPASGCFGFGKEFSRFYDLSCLGAIMIKATTKEPRFGNPTPRVAETGAGMLNAIGLQNPGLDSVLHHELPWLEQFDTPIIANVAGSQVDDYVEVAEHISKAPN---VHALELNISCPNVKTGGIAFGTNPEMAADLTKAVKEVSDVPVYVKLSPNV--ANITEIALAIEE-AGADGLTMINTLI-GMRLDLKTGKPIL--ANKTGGLSGPAVKPVAIRMVYEVSQMV-NIPIIGMGGVQTAEDALEFLLAGASAVAVGTANFV-NPFACPEIIEQLPSVLLQYGYQSIEECIGRSWNHEKQPAHHRA
4EF8 Chain:A ((36-346))SLQVNLLNNTFANPFMNAAGVMCTTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAV-ATEKGVILELNLSCPNVPG-KPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRYQTLDEFRGKVRTL---------


General information:
TITO was launched using:
RESULT:

Template: 4EF8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1773 -198201 -111.79 -660.67
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : -111.79
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.496

(partial model without unconserved sides chains):
PDB file : Tito_4EF8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4EF8-query.scw
PDB file : Tito_Scwrl_4EF8.pdb: