Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMFKFKKNFLVGLSAALMSISLFSATASAASTDYWQNWTDGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTTGSPFRTINYNAGVWAPNGNGYLTLYGWTRSPLIEYYVVDSWGTYRPTGTYKGTVKSDGGTYDIYTTTRYNAPSIDGDRTTFTQYWSVRQSKRPTGSNATITFSNHVNAWKSHGMNLGSNWAYQVMATEGYQSSGSSNVTVW
1M4W Chain:A ((20-179))------------------------------------WTDAPGTVSMTLHSGGSYSTSWRNTGNFVAGKGWSTGGR-RTVTYNAS-FNPSGNAYLTLYGWTRNPLVEYYIVESWGTYRPTGTYKGTVTTDGGTYDIYETWRYNAPSIEGTR-TFQQFWSVRQQKRTSG---TITIGNHFDAWARAGMNLGSH-DYQIMATEGYQ----------


General information:
TITO was launched using:
RESULT:

Template: 1M4W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 833 -32676 -39.23 -204.22
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.79

3D Compatibility (PKB) : -39.23
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.575

(partial model without unconserved sides chains):
PDB file : Tito_1M4W.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1M4W-query.scw
PDB file : Tito_Scwrl_1M4W.pdb: