Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQKDHVGAVYELLNEAAIMIKNELQISYIEALAEAGEMYFLEKTDQLKLPADQKTKQLQALLEKAEFGTYEHEWVRKAFQLAVLKGMKDISHPNRQMTPDTIGLFISYLVNKFMADKKELTILDPALGTGNLLFTVLNQLSEKTANSFGIEIDDVLLKIAYAQANLLKKELELFHQDSLEPLFI------DPVDTVICDLPVGYYPNDEGAEAFELKADEGHSFAHHLFIEQSVKHTKPGGYLFFMIPNHLFESS-------QSGKLKQFFKDKVHINALLQLPKSIFKDE-AHAKSILVLQKQGENTKAPGQILLANLPSFSNQKAMLDMMAQFDEWFKKEK
1QYR Chain:A ((18-199))----------------------------------------------------------------------------------------------NFLNDQFVIDSIVSAINP----QKGQAMVEIGPGLAALTEPVGER----LDQLTVIELDRDLAARLQTHPFL-GPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNIST---------------------PLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHAT-------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1QYR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 776 -50547 -65.14 -300.87
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : -65.14
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.385

(partial model without unconserved sides chains):
PDB file : Tito_1QYR.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1QYR-query.scw
PDB file : Tito_Scwrl_1QYR.pdb: