Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKLLAAGIIGLLTVSIASPSFAAEKQADTNVAVLFDGSGSMVQKTGGERKIDIAKKSVKSFAELLP-KDTNLMLRVFGHAGNNKLSGKALSCSTTETIYGLHPY-EGSLFDNSLSELK-PTGWTPIAKALADTRKEFEAF----DADGKNVVYLITDGEETCGG-DPAAEIEKLRASNVDTIVNIIGFNFDVK---GNEEMKQAAVAGG-GEYISANSADEFEQAWEKEAQKFTE
1N3Y Chain:A ((129-315))---------------------------QEQDIVFLIDGSGSISS-----RNFATMMNFVRAVISQFQRPSTQFSLMQFSNKF--------------QTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAG--IIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIF-


General information:
TITO was launched using:
RESULT:

Template: 1N3Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 902 40192 44.56 229.67
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : 44.56
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.634

(partial model without unconserved sides chains):
PDB file : Tito_1N3Y.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1N3Y-query.scw
PDB file : Tito_Scwrl_1N3Y.pdb: