Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-GTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITIS
2CFE Chain:A ((16-162))
-----------------------GTIKFKLFDDVVPKTAANFRALCTGEKGFG------------YAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDG--MNVVKAIEAEGS-GSGKPRSRIEIAKCGVC
General information:
TITO was launched using:
RESULT:
Template:
2CFE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61953 for 1086 contacts (-57.0/contact) +
2D Compatibility (PS) -15360 + (NN) -11544 + (LL) 928
1D Compatibility (HY) -10400 + (ID) 3700
Total energy: -102029.0 ( -93.95 by residue)
QMean score : 0.636
(partial model without unconserved sides chains):
PDB file :
Tito_2CFE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CFE-query.scw
PDB file :
Tito_Scwrl_2CFE.pdb
: