Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNYSEVELLSRAHQLFAGDSRRPGLDAGTTPYGDLLSRAADLNVGAGQRRYQLAVDHSRAALLSAARTDAAAGAVITGAQRDRAWARRSTGTVLDEARSDTTVTAVMPIAQREAIRRRVARLRAQRAHVLTARRRARRHLAALRALRYRVAHGPGVALAKLRLPSPSGRAGIAVHAALSRLGRPYVWGATGP-------------NQFDCSGLVQWAYAQAGVHLDRTTYQQINEGIPVPRSQVRPGDLVFPHP---GHVQLAIGNNLVVEAPHAGASVRVSSLGNNVQIRRPLSGR |
4LJ1 Chain:A ((40-166)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------QQITDVVIARGLSQRGVPFSWAGGGISGPTRGTGTGINTVGFDASGLIQYAYAGAGLKLPRSSGQMYKVGQKVLPQQARKGDLIFYGPEGTQSVALYLGKGQMLEV---GDVVQVSPVRTN---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LJ1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -55524 for 703 contacts (-79.0/contact) +
2D Compatibility (PS) -11205 + (NN) -4291 + (LL) 13604
1D Compatibility (HY) -7200 + (ID) 1900
Total energy: -66516.0 ( -94.62 by residue)
QMean score : 0.453
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