Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVD-AGSCNGCEVEISGAFGPVYDAER---------FGA----RLVA--------------SPQHADALLVTGVVTHNMA-------------------GPLRKTLEATPRPRVVIACGDCALNRGVFADA--YGVVGAVGEVV----------PVDVEIAGCPPTPAAIMAALRSVTGK
5AA5 Chain:A ((12-202))
-------------------------TQHTPALKEVHILWITAGLGCDGDSVSITAASQPSVEDVVLGAIPGLPKVHLHNPVLAYENGDEFMAPFHKAARGEIDNFVLVLEGSIPNERINGEGYWAAMGTDPQTHQPITIPEWLDRLAPKALAVVGAGTCATYGGIHAMEGNPTGCMGLADYLGWQWKSRAGLPI-VNVPGCPVQPDNFMETLLYLLY-
General information:
TITO was launched using:
RESULT:
Template:
5AA5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83281 for 990 contacts (-84.1/contact) +
2D Compatibility (PS) -13971 + (NN) -1958 + (LL) 2304
1D Compatibility (HY) -5600 + (ID) 1200
Total energy: -103706.0 ( -104.75 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_5AA5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AA5-query.scw
PDB file :
Tito_Scwrl_5AA5.pdb
: