Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRVVRYLSVVVAITLMLTAESVSIATAAVPPLQPIPGVASVSPANGAVVGVAHPVVVTFTTPVTDRRAVERSIRISTPHNTTGHFEWVASNVVRWVPHRYWPPHTRVSVGVQ--------------ELTEGFETGDALIGVASISAHTFTVSRNGEVLRTMPASLGKPSRPTPIGSFHAMSKERTVVMDSRTIGIPLNSSDGYLLTAHYAVRVTWSGVYVHSAPWSVNSQGYANVSHGCINLSPDNAAWYFDAVTVGDPIEVVG
3VYP Chain:A ((2-240))
--------------------------LTFQTSSPAHLTMPYVMPGDGEVVGVGEPVAIRFDENIADRGAAEKAIKITTNPPVEGAFYWLNNREVRWRPEHFWKPGTAVDVAVNTYGVDLGEGMFGEDNVQTHFTIGDEVIATADDNTKILTVRVNGEVVKSMPTSMGKDSTPTANGIYIVGSRYKHIIMDSSTYGVPVNSPNGYRTDVDWATQISYSGVFVHSAPWSVGAQGHTNTSHGCLNVSPSNAQWFYDHVKRGDIVEVVN
General information:
TITO was launched using:
RESULT:
Template:
3VYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125171 for 1633 contacts (-76.7/contact) +
2D Compatibility (PS) -24134 + (NN) -6558 + (LL) 3452
1D Compatibility (HY) -16000 + (ID) 4650
Total energy: -173061.0 ( -105.98 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3VYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VYP-query.scw
PDB file :
Tito_Scwrl_3VYP.pdb
: