Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEVVTAAPAPPVVRLPPAV-RGPKLFQGLAFVVSRRRLLGRFVRRYGKAFTANILMYGRVVVVADPQLARQVFTSSPEELGNIQP--N-LSRMFGSGSVFALDGDDHRRRRRLLAPPFHGKSMKNYETIIEEETLRETANWP-------QGQAFATLPSMMHITLNAILRAIFGAGGSEL--DELRRLIPPWVTLGSRLAALPKPKRDYGRLSPWGRLAEWRRQYDTVIDKLIEAERADPNFADRTDVLALMLRSTYD-DGSIMSRKDIGDELLTLLAAGHETTAATLGWAFERLSRHPDVLAALVEEVDNGG--------------HELRQAAILEVQRARTVIDFAARRVNPPVYQL--GEWVIPRGYSIIINIAQIHGDPDVFPQPDRFDPQRYIGSKP-------------------SPFAWIPFGGGTRRCVGAAFANMEMDVVLRTVLRHFTLETTTAAGE-RSHGRGVAFTPKDGGRVVMRRR |
| 4LXJ Chain:A ((55-524)) | --------------RPPLVFYWIPWVGSAVVYGMKPYEFFEECQKKYGDIFSFVLLG-RVMTVYLGPKGHEFVFNAKLADVSAEAAYAHLTTPVFGKGVIYDCPNSRLMEQKKFVKGALTKEAFKSYVPLIAEEVYKYFRDSKNFRLNERTTGTIDVMVTQPEMTIFTASRSLLGKEMRAKLDTDFAYLYSDLDKGFTPI---NFVFPNLP-LEHYRKRDHAQKAISGTYMSLIKERRKNN-DIQDRDLIDSLMKNSTYKDGVKMTDQEIANLLIGVLMGGQHTSAATSAWILLHLAERPDVQQELYEEQMRVLDGGKKELTYDLLQEMPLLNQTIKETLRMHHPLHSLFRKVMK-DMHVPNTSYVIPAGYHVLVSPGYTHLRDEYFPNAHQFNIHRWNNDSASSYSVGEEVDYGFGAISKGVSSPYLPFGGGRHRCIGEHFAYCQLGVLMSIFIRTLKWHYPEGKTVPPPDFTSMVTLPTGPAKIIWEKR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LXJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199013 for 3472 contacts (-57.3/contact) +
2D Compatibility (PS) -45997 + (NN) -27337 + (LL) 1552
1D Compatibility (HY) -25600 + (ID) 3850
Total energy: -300245.0 ( -86.48 by residue)
QMean score : 0.549
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