Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDA-ADAQAVVTNYHVGGILIGSDTDLTIFD---GALAEIVAGGGPLPLAVSVDEEGGRVSRLRSLIGGTGPSARELAQTRTVQQVRDLARDRGRQMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYAQGLRDAGVLPVLKHFPGHGRGSGDSHNGGVTTP-PLDDLVGDDLVPYRTLVTQAP-VGVMVGHLQVPGLTGSEPASLSKAA-VNLLRTGTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALWVTTKEVPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
| 5BZA Chain:A ((5-325)) | ----------------------------------------------------------------LGKLFFCGFDDFNEEAREVIQKYRPAGVLIYPGVLSK-EYLFLDFMNFLSR---NGRFIVSSDHEGGQLEVLK-YVP-SFPGNLAAG-KVDPVFTGRYCEMAGRIMNTLGFNMVFAPVLDLLS--------LRSFGSDPEVVASHGMEACMGYFKGGVIPCIKHFPGHGKTADDSHYLLPTVNASFEELWREDLLPFRRIFQSRVKTAVMTAHVKYPAVD-DLPATLSKKLITEVLREKLN-----FKGLVLSDAME-MKAISENFSVEEAVRFFIEAGGNMILLDNFRDLPVYYESLKKLIEDGSIERGKVERSIKIVDEYLSALE---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5BZA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -156753 for 2680 contacts (-58.5/contact) +
2D Compatibility (PS) -32824 + (NN) -22537 + (LL) 2136
1D Compatibility (HY) -22800 + (ID) 4550
Total energy: -237328.0 ( -88.56 by residue)
QMean score : 0.517
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