Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSPVAVIARFMPRPDARSALRALLDAMITPTRAEDGCRSYDLYESADG-GELVLFERYRSRIALDEHRGSPHYLNYRAQVGELLTRPVAVTVLAPLDEASA
4DN9 Chain:A ((22-115))
--SMYGLIGKMRATPGQRDALIAILV---EGASSMPGCLSYVVAQDPKDPDAIWITEVWDSPESHKASLSLPSVQDAIACGRPLIAALDEHHETVPVGG---
General information:
TITO was launched using:
RESULT:
Template:
4DN9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32664 for 625 contacts (-52.3/contact) +
2D Compatibility (PS) -10180 + (NN) -4974 + (LL) 1076
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -50042.0 ( -80.07 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_4DN9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DN9-query.scw
PDB file :
Tito_Scwrl_4DN9.pdb
: