Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKD-FQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVHAW
4DJJ Chain:B ((6-191))
-----LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHS-
General information:
TITO was launched using:
RESULT:
Template:
4DJJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94065 for 1477 contacts (-63.7/contact) +
2D Compatibility (PS) -19641 + (NN) -3265 + (LL) 648
1D Compatibility (HY) -11600 + (ID) 3400
Total energy: -131323.0 ( -88.91 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_4DJJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DJJ-query.scw
PDB file :
Tito_Scwrl_4DJJ.pdb
: