Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYG---PLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSACLRDARERYQVPVVEVILP---AVRRAVAATRNGRIGVIGTRATITSHAYQDAFAAARDTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGDPEAFTKLAARFLGPVLGGVQPVHPSRIH
2JFY Chain:B ((3-192))
-------IGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEAL---DFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQV-EDKNAPILVLGTKATIQSNAYDNALKQQGYLNISHLATSLFVPLIEESILEGELLETCMHYYFTPLEILP-EVIILGCTHFPLIAQKIE---------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JFY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154222 for 1485 contacts (-103.9/contact) +
2D Compatibility (PS) -19999 + (NN) -5864 + (LL) 5796
1D Compatibility (HY) -18800 + (ID) 3350
Total energy: -196439.0 ( -132.28 by residue)
QMean score : 0.659
(partial model without unconserved sides chains):
PDB file :
Tito_2JFY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFY-query.scw
PDB file :
Tito_Scwrl_2JFY.pdb
: