Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMPTEYPATAEESVDVITDALLTASRLLVAISAHSIAQVDENITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTEHRRTEIARIVEQMAPAERHGLVRALTAFTEAGGEPDARYEIE
5CYV Chain:A ((5-144))
----------QALSDDIGFLLSRVGGMVLGAVNKALVP--TGLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTL-----RNKLIAATEEGRRLRDDAKARVDAAHGRYFEGIPDTVVNQMRDTLQSIAFPTF---------
General information:
TITO was launched using:
RESULT:
Template:
5CYV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70419 for 875 contacts (-80.5/contact) +
2D Compatibility (PS) -13973 + (NN) -3743 + (LL) 1504
1D Compatibility (HY) -5600 + (ID) 1200
Total energy: -93431.0 ( -106.78 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_5CYV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CYV-query.scw
PDB file :
Tito_Scwrl_5CYV.pdb
: