Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDLPSLDASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
2C9B Chain:H ((15-160))
--------ASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
General information:
TITO was launched using:
RESULT:
Template:
2C9B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110290 for 1157 contacts (-95.3/contact) +
2D Compatibility (PS) -16399 + (NN) -10457 + (LL) 100
1D Compatibility (HY) -18000 + (ID) 7300
Total energy: -162346.0 ( -140.32 by residue)
QMean score : 0.658
(partial model without unconserved sides chains):
PDB file :
Tito_2C9B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C9B-query.scw
PDB file :
Tito_Scwrl_2C9B.pdb
: