Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSVSRRDVLKFAAATPGVLGLGVVASSLRAAPASAGSLGTLLDYAAGVIPASQIRAAGAVGAIRYVSDRRPGGAWMLGKPIQLSEARDLSGNGLKIVSCYQYGKGSTADWLGGASAGVQHARRGSELHAAAGGPTSAPIYASIDDNPSYEQYKNQIVPYLRSWESVIGHQRTGVYANSKTIDWAVNDGLGS-YFWQHNWGSPKGYTHPAAHLHQVEIDKRKVGGVGVDVNQILKPQFGQWA------ |
2NW0 Chain:A ((1-189)) | -------------------GYIVDMSKWN-----------------GSPDWDTAKGQLDLVIARVQDGSNYVD------PVYKDYVAAMKARNIP-FGSYAFCRFVS----------VEDAKVEARDFWNRGDKDSLFWVADVEVTTM-SDMRAGTQAFIDELYRL-GAKKVGLYVGHHKYEEFGAAQIKCDFTWIPRYGAKPAYPCD---LWQYDEYGQVPGIGKCDLNRLNGDKSLDWFTGKGEE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NW0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -24125 for 1515 contacts (-15.9/contact) +
2D Compatibility (PS) -20115 + (NN) -14318 + (LL) 4044
1D Compatibility (HY) -6000 + (ID) 1200
Total energy: -61714.0 ( -40.74 by residue)
QMean score : 0.407
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