Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTDIGAPVTVQVAVDPPYPVVIGTGLLDELEDLLA-DRH-KVAVVHQPGLA-ETAEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGVSIVHLPTTLLGMVDAAVGGKTGINTDAGKNLVGAFHQPLAVLVDLATLQTLPRDEMICGMAEVVKAGFIADPVILDLIEADPQAALDPAGDVLPELIRRAITVKAEVVAADEKESELREILNYGHTLGHAIERRERY-RWRHGAAVSVGLVFAAELARLAGRLDDATAQRHRTILSSLGLPVSYDPD-ALPQLLEIMAGDKKTRAGVLRFVVLDGLAKPGRMVGPDPGLLVTAYAGVCAP |
| 3OKF Chain:A ((37-388)) | ------------LGERSYPISIGAGLFAN-PALLSLSAKQKVVIVTNHTVAPLYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRGVDFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPKAVVIDTDCLTTLPAREFAAGMAEVIKYGIIYDSAFFDWLEAQMEALYALDEQALTYAIARCCQIKAEVVAQDEK--GIRALLNLGHTFGHAIEAHMGYGNWLHGEAVSAGTVMAAKTAQLQGLIDASQFERILAILKKAHLPVRTPENMTFADFMQHMMRDKKVLAGELRLVLPTSIGTSAVVKGVPEAVIAQAIEYCR-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OKF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -236506 for 2934 contacts (-80.6/contact) +
2D Compatibility (PS) -37322 + (NN) -11745 + (LL) 1224
1D Compatibility (HY) -27600 + (ID) 6700
Total energy: -318649.0 ( -108.61 by residue)
QMean score : 0.541
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